Would it be a neat idea if AIs could send trigger signals to crewmembers, and trigger/activate nanites remotely? I suggest two abilities; the first one, an ability to directly send a signal to a crewmember, and also an ability that changes the signal sent.
This will allow AI to coordinate with Science and allow it to remotely activate healing nanites on fallen crewmembers , or further increase its ability to help security with sleep nanites.
Malf AIs should also get a module that allows them to load a virtual nanite disk into nanite machines and download, modify and upgrade nanite programs with it.